Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24360193_24367658_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24360193 - 24367658

Intron Length:

7466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAACTCCC

5'SS Class:

major

3'SS Sequence:

TAATTCTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GTCTCTTTAATT

Flanking Amino Acid:

DRQELETGQEVRQLHREFLR

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

60.6

44.5

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

82.9

0.74

0.9

76.8

36.9

Minor 5ss

40.6

-1.1

2.8

46.4

41.8

Minor BPS

77.9

0.95

1.1

84.22

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008403

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029974

24351877 - 24368160

16284