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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24364167_24367658_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24364167 - 24367658
Intron Length:
3492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTCCC
5'SS Class:
major
3'SS Sequence:
TCCTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATAATTAATC
Flanking Amino Acid:
IAKSLKQGKRGILERLDSGE
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
60.6
44.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.9
0.74
0.8
80
32
Minor 5ss
40.6
-1.1
2.8
46.4
41.8
Minor BPS
56.7
0.19
1.8
67.23
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008403
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008722
24351693 - 24367697
16005