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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24392285_24392416_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24392285 - 24392416
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACGTATTTATTT
Flanking Amino Acid:
ARESYGFNNIVGYPKEERFA
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.4
0.75
0.7
77.7
31.1
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
48.7
-0
1.7
62.52
42.4

Associated Gene:

Gene:
DMGDH
Ensembl Gene ID:
ENSAPLG00000008567
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024172
24368181 - 24414730
46550
ENSAPLT00000008947
24368033 - 24414730
46698