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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24400646_24401727_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24400646 - 24401727
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
EKGFRAWGAEMNCDTNPLEA
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.3
74.9
37
Major BPS
71.4
0.53
1
67
39.8
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
27
-2.6
2.9
30.9
42.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
DMGDH
Ensembl Gene ID:
ENSAPLG00000008567
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024172
24368181 - 24414730
46550
ENSAPLT00000008947
24368033 - 24414730
46698