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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24421096_24423422_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24421096 - 24423422
Intron Length:
2327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTCCCTACTA
Flanking Amino Acid:
RSQLLSGRYQIHTGLQHQII
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.3
0.61
0.8
71.7
34.2
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
62.9
0.4
1.9
79.96
36.4

Associated Gene:

Gene:
ARSB
Ensembl Gene ID:
ENSAPLG00000009330
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009736
24420826 - 24486596
65771