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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24426246_24428207_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24426246 - 24428207
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTCA
5'SS Class:
major
3'SS Sequence:
CTTTCCACCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACATTCAACT
Flanking Amino Acid:
DIIANHKTEKPLFLYLAFQS
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.6
38.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.4
0.57
0.8
66.7
34.1
Minor 5ss
35
-1.7
3.5
47.4
48.2
Minor BPS
56
0.27
1.7
76.08
39.9

Associated Gene:

Gene:
ARSB
Ensembl Gene ID:
ENSAPLG00000009330
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009736
24420826 - 24486596
65771