Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24558162_24576479_F

Intron Information:

Intron Rank:

131715

Intron Class:

major

Intron Phase:

Intron Coordinates:

24558162 - 24576479

Intron Length:

18318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGCTG

5'SS Class:

major

3'SS Sequence:

TTTTCTCATTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTTCTCATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

60.8

45.3

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

86.9

0.83

0.8

85.9

27.5

Minor 5ss

29.4

-2.4

3.4

39.3

Minor BPS

59.2

0.27

1.8

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020711

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037798

24558058 - 24577947

19890