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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24645656_24647527_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24645656 - 24647527
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CACACCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACTGCTTTCACA
Flanking Amino Acid:
AVISLVMFKKVHGLYRTTGA
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
60
0.23
0.8
50.5
33.6
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
54.2
0.12
1.9
64.77
42.4

Associated Gene:

Gene:
SCAMP1
Ensembl Gene ID:
ENSAPLG00000030262
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006388
24614385 - 24684215
69831
ENSAPLT00000021294
24645307 - 24684215
38909
ENSAPLT00000018992
24645307 - 24684215
38909