About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24649412_24650810_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24649412 - 24650810
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TACATGTAATCT
Flanking Amino Acid:
CWYRPLYGAFRSDSSFRFFV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.5
0.82
0.7
84.3
23.5
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
39.5
-0.7
2.3
56.74
45.9

Associated Gene:

Gene:
SCAMP1
Ensembl Gene ID:
ENSAPLG00000030262
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018992
24645307 - 24684215
38909
ENSAPLT00000006388
24614385 - 24684215
69831
ENSAPLT00000021294
24645307 - 24684215
38909