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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24650971_24655507_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24650971 - 24655507
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTCTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCTTCTACA
Flanking Amino Acid:
TVKIMYYLWMFHTVTLFLNI
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.8
0.87
0.6
83.8
24.5
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
57.4
0.22
1.9
71.31
40.9

Associated Gene:

Gene:
SCAMP1
Ensembl Gene ID:
ENSAPLG00000030262
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018992
24645307 - 24684215
38909
ENSAPLT00000006388
24614385 - 24684215
69831
ENSAPLT00000021294
24645307 - 24684215
38909