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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24659127_24659397_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24659127 - 24659397
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTCTA
5'SS Class:
major
3'SS Sequence:
CTGTTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
EPPAYTQIAKEHALAQAELL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
71.8
39.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.1
0.72
0.9
81.1
35.6
Minor 5ss
40.2
-1.1
2.7
50.6
45.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
SCAMP1
Ensembl Gene ID:
ENSAPLG00000030262
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018992
24645307 - 24684215
38909
ENSAPLT00000006388
24614385 - 24684215
69831
ENSAPLT00000021294
24645307 - 24684215
38909