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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24668089_24683621_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24668089 - 24683621

Intron Length:

15533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

GTTTACAGAACT

Flanking Amino Acid:

ADPDLNNPFKDPSVTQVTRN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.1

37.5

Major BPS

74.9

0.62

81.3

29.9

Major PPT

88.2

0.86

0.6

81.7

30.3

Minor 5ss

25.6

-2.8

3.1

31.9

42.9

Minor BPS

55.6

0.26

1.9

80.52

40.2

Associated Gene:

Gene:

SCAMP1

Ensembl Gene ID:

ENSAPLG00000030262

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021294

24645307 - 24684215

38909

ENSAPLT00000006388

24614385 - 24684215

69831