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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24702059_24705533_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24702059 - 24705533
Intron Length:
3475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGACAGCC
5'SS Class:
weak_major
3'SS Sequence:
CAATACAACTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TCAAACTTAAAC
Flanking Amino Acid:
RLFLEQLRNLLNPNLPGFDT
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.2
47.2
35.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
56.8
0.15
1
52.3
41
Minor 5ss
34.7
-1.7
3.5
52.5
44.3
Minor BPS
54.7
0.13
1.7
62.75
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016508
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033958
24701889 - 24708315
6427