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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24740286_24741539_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24740286 - 24741539
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GCCATTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTATTTTATT
Flanking Amino Acid:
SISTFQRALKDPNQLIRASA
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
74.7
28.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75
0.56
0.9
72.6
37.5
Minor 5ss
29.2
-2.4
3.1
34.7
35.4
Minor BPS
56.9
0.3
1.8
76.33
40.7

Associated Gene:

Gene:
AP3B1
Ensembl Gene ID:
ENSAPLG00000013675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024693
24718285 - 24848158
129874
ENSAPLT00000022739
24718285 - 24848158
129874
ENSAPLT00000014333
24718285 - 24848158
129874