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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24775731_24775813_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24775731 - 24775813
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACCAT
5'SS Class:
major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AACTATTTATCT
Flanking Amino Acid:
NIATMSIQRKGMFEPYLKSF
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
63.9
42
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
45
-0.5
3
64.4
47
Minor BPS
52
0.14
1.8
68.35
42.4

Associated Gene:

Gene:
AP3B1
Ensembl Gene ID:
ENSAPLG00000013675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024693
24718285 - 24848158
129874
ENSAPLT00000022739
24718285 - 24848158
129874
ENSAPLT00000014333
24718285 - 24848158
129874