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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24778212_24779581_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24778212 - 24779581
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
CCTGTTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CATATATTGACT
Flanking Amino Acid:
NISTLLREFQTYVKSQDKQF
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
73.2
0.52
0.8
68.2
32.2
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
52.8
0.17
1.7
69.54
41.2

Associated Gene:

Gene:
AP3B1
Ensembl Gene ID:
ENSAPLG00000013675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024693
24718285 - 24848158
129874
ENSAPLT00000022739
24718285 - 24848158
129874
ENSAPLT00000014333
24718285 - 24848158
129874