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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24787149_24804657_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24787149 - 24804657
Intron Length:
17509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
HMAKLLDNITTKLLTQYVLN
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
61.3
0.28
1
62
30.6
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
AP3B1
Ensembl Gene ID:
ENSAPLG00000013675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022739
24718285 - 24848158
129874