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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24798768_24804657_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24798768 - 24804657
Intron Length:
5890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
AKLYLTNSKQTKLLTQYVLN
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
61.3
0.28
1
62
30.6
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
AP3B1
Ensembl Gene ID:
ENSAPLG00000013675
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014333
24718285 - 24848158
129874
ENSAPLT00000024693
24718285 - 24848158
129874