Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_24812218_24814939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24812218 - 24814939

Intron Length:

2722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATATCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATTTTTTAATA

Flanking Amino Acid:

AKKASGAVKESNAEEIKRKA

Intron Amino Acid Position:

880

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

38.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

75.1

0.56

0.9

67.7

42.6

Minor 5ss

41.6

-0.9

3.2

56.7

47.6

Minor BPS

77.2

0.85

79.7

29.8

Associated Gene:

Gene:

AP3B1

Ensembl Gene ID:

ENSAPLG00000013675

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024693

24718285 - 24848158

129874

ENSAPLT00000022739

24718285 - 24848158

129874

ENSAPLT00000014333

24718285 - 24848158

129874