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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25127291_25131110_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25127291 - 25131110
Intron Length:
3820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATATTA
Flanking Amino Acid:
VRFLVQIDDCRFASAGDDGI
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
68.9
0.43
0.9
61.3
33.6
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
48.2
-0.1
2.1
67.06
39

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048316
25123738 - 25144490
20753
ENSAPLT00000032675
25126671 - 25144490
17820
ENSAPLT00000027237
25123738 - 25144490
20753
ENSAPLT00000007962
25123738 - 25149817
26080