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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25131160_25132942_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25131160 - 25132942
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTCT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTACCCTTAATT
Flanking Amino Acid:
DGIIFLWNAQTGEKLFELHG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
64.4
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
41.5
-0.9
3.1
57.4
46.9
Minor BPS
82.5
1.1
1
90.75
32.3

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032675
25126671 - 25144490
17820
ENSAPLT00000027237
25123738 - 25144490
20753
ENSAPLT00000007962
25123738 - 25149817
26080
ENSAPLT00000048316
25123738 - 25144490
20753