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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25133498_25133987_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25133498 - 25133987
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TATATCTGATTT
Flanking Amino Acid:
KVSCFHSTVKCLTVLQRLDV
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
50.2
0.08
1.7
70.57
40.4

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032675
25126671 - 25144490
17820
ENSAPLT00000027237
25123738 - 25144490
20753
ENSAPLT00000007962
25123738 - 25149817
26080
ENSAPLT00000048316
25123738 - 25144490
20753