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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25134100_25134886_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25134100 - 25134886
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTCAAAG
Flanking Amino Acid:
LCKTSHLTDAGISTLVELPK
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.8
0.74
0.9
85.8
26
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
59.2
0.15
1.7
68.37
39.3

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048316
25123738 - 25144490
20753
ENSAPLT00000032675
25126671 - 25144490
17820
ENSAPLT00000027237
25123738 - 25144490
20753
ENSAPLT00000007962
25123738 - 25149817
26080