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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25134950_25136148_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25134950 - 25136148
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTGGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTCTCTATCT
Flanking Amino Acid:
CVAAAVGKELIIFRLIASSD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
68
0.45
1
57.8
39
Major PPT
64.6
0.33
1.2
67.5
38
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
57.8
0.32
2
80.25
42

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007962
25123738 - 25149817
26080
ENSAPLT00000048316
25123738 - 25144490
20753
ENSAPLT00000032675
25126671 - 25144490
17820
ENSAPLT00000027237
25123738 - 25144490
20753