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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25136260_25137283_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25136260 - 25137283
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
ATAGTATGATTT
Flanking Amino Acid:
DNILSLVSVNDLTFVTGSHV
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
62.5
42.3
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
78.8
0.65
0.7
70.8
30.3
Minor 5ss
30
-2.3
3.3
35.2
43.3
Minor BPS
41.6
-0.5
1.8
56.81
39.8

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027237
25123738 - 25144490
20753
ENSAPLT00000007962
25123738 - 25149817
26080
ENSAPLT00000048316
25123738 - 25144490
20753
ENSAPLT00000032675
25126671 - 25144490
17820