About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25137314_25137394_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
25137314 - 25137394

Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTGAGTTAA

5'SS Class:
strong_major

3'SS Sequence:
TCTGTCCATCCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTGAG

U12 Branch Point Sequence:
ACTTCTGGGACT

Flanking Amino Acid:
DLTFVTGSHVDSQTEIKLSQ

Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.2
0.78
0.9
76.3
30.6

Major BPS
67.4
0.43
1.5
65.3
43.7

Major PPT
75.2
0.57
0.9
66.5
39.8

Minor 5ss
33.6
-1.9
2.8
31.7
42.6

Minor BPS
47.8
-0
2.2
69.53
41.9

Associated Gene:

Gene:
WDR41

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

25123738 - 25144490
20753

25123738 - 25149817
26080