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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25137469_25139938_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25137469 - 25139938
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAA
U12 Branch Point Sequence:
GTTTTTGTAAGT
Flanking Amino Acid:
SVQHLTCDEECVFAAVGKGI
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
62.3
0.31
1.4
63.7
43.9
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
49.9
0.08
2.2
75.46
41.9

Associated Gene:

Gene:
WDR41
Ensembl Gene ID:
ENSAPLG00000007656
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032675
25126671 - 25144490
17820
ENSAPLT00000027237
25123738 - 25144490
20753
ENSAPLT00000007962
25123738 - 25149817
26080
ENSAPLT00000048316
25123738 - 25144490
20753