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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25152858_25154412_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25152858 - 25154412
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
GCTAACTGGAGT
Flanking Amino Acid:
GRISEEYFAQTDEEKRQGLP
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
83.3
30.3
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
32.8
-2
3
41.9
44.8
Minor BPS
43.5
-0.4
2
58.55
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007678
25151137 - 25244913
93777
ENSAPLT00000036060
25151137 - 25244913
93777
ENSAPLT00000018708
25151137 - 25244913
93777