About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25176299_25176684_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25176299 - 25176684
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TATTCTTAGACA
Flanking Amino Acid:
SINTFIKKGKEWQGVYYTNR
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
70.1
0.45
1
69.4
41.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
64.4
0.45
1.7
74.9
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036060
25151137 - 25244913
93777
ENSAPLT00000018708
25151137 - 25244913
93777
ENSAPLT00000007678
25151137 - 25244913
93777