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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25176826_25177304_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25176826 - 25177304
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
EITSEDHVVQYVNPAFERMM
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
1
75.5
38.3
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036060
25151137 - 25244913
93777
ENSAPLT00000018708
25151137 - 25244913
93777
ENSAPLT00000007678
25151137 - 25244913
93777