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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25177384_25181278_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25177384 - 25181278
Intron Length:
3895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
TTACTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CATTTACTAATT
Flanking Amino Acid:
RGEVRSQFKLRACNAVFTAL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71
40.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.2
0.64
0.9
75
38.5
Minor 5ss
41.7
-0.9
2.6
51.2
45.4
Minor BPS
49.6
0.05
1.9
70.61
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036060
25151137 - 25244913
93777
ENSAPLT00000018708
25151137 - 25244913
93777
ENSAPLT00000007678
25151137 - 25244913
93777