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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25280241_25281510_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25280241 - 25281510
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
AACTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTCCTCAAGT
Flanking Amino Acid:
EGKCELVIIQDLDAEEQKSS
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
72.7
0.51
0.9
62.6
38.7
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
73.2
0.81
1.8
92.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001528
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030695
25256993 - 25293719
36727