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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25281628_25290459_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25281628 - 25290459
Intron Length:
8832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTGGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGTGTATGAACT
Flanking Amino Acid:
TEWNTANEYKITTSLKISNI
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
73.9
0.54
1.1
69.5
45.7
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
52.7
0.16
1.8
74.64
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001528
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030695
25256993 - 25293719
36727