About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25323129_25324298_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25323129 - 25324298
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCCCTAATT
Flanking Amino Acid:
ADLCHSFHGSAQMKIGCDNT
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
71
0.47
0.9
71.7
33.1
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
80.3
1.03
1.5
96.93
27.7

Associated Gene:

Gene:
CRHBP
Ensembl Gene ID:
ENSAPLG00000002564
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002589
25322897 - 25332352
9456