About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25324417_25326692_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25324417 - 25326692
Intron Length:
2276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAACTTTTAATC
Flanking Amino Acid:
LGHLNGLFLKKPSAGCAGVG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.2
0.63
0.8
77
31.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
63.3
0.4
1.2
65.37
33.8

Associated Gene:

Gene:
CRHBP
Ensembl Gene ID:
ENSAPLG00000002564
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002589
25322897 - 25332352
9456