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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25331199_25331609_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25331199 - 25331609
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCCCAG
U12 Branch Point Sequence:
TTTGCCCCAGCC
Flanking Amino Acid:
AYKGETRYLEVRDAGEDEPF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
37.4
-0.7
1.5
40.1
42
Major PPT
73.3
0.52
1
66.2
40.7
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
47.2
-0.2
2.2
67.63
43.6

Associated Gene:

Gene:
CRHBP
Ensembl Gene ID:
ENSAPLG00000002564
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002589
25322897 - 25332352
9456