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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25397607_25403108_F

Intron Information:

Intron Rank:
125446
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
25397607 - 25403108
Intron Length:
5502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TCCTCCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
56.3
0.14
1
56.7
31.3
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
49.7
-0
2
61.86
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017590
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026618
25396951 - 25407278
10328