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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25405421_25405723_F

Intron Information:

Intron Rank:
125448
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
25405421 - 25405723
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACAGCAA
5'SS Class:
major
3'SS Sequence:
CTGACCTGCATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.1
52
40.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
58.9
0.2
1
53.2
36.6
Minor 5ss
28.5
-2.5
3.5
34.8
43.6
Minor BPS
65.9
0.58
1.8
83.55
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017590
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026618
25396951 - 25407278
10328