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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25428636_25429454_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25428636 - 25429454
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGCGTTGA
5'SS Class:
major
3'SS Sequence:
TGTTCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
GGTAGCTTAATT
Flanking Amino Acid:
IKTCLDNLTRKNSRRSIKVD
Intron Amino Acid Position:
1538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
65
37.6
Major BPS
64.7
0.37
1
73
31.5
Major PPT
81.3
0.7
0.8
73.3
37.1
Minor 5ss
34.8
-1.7
3
39.9
44
Minor BPS
59.6
0.38
1.8
74.45
42.2

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000031192
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000019323
25425763 - 25556835
131073