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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25429616_25430224_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25429616 - 25430224
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATAAACTTAAAT
Flanking Amino Acid:
YQEIINEIAKDIRNQRRYRH
Intron Amino Acid Position:
1485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
59.7
0.38
1.7
75.23
40.3

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000019323
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000031192
25425763 - 25556835
131073