About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25431336_25434612_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25431336 - 25434612
Intron Length:
3277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTTTTTAAAA
Flanking Amino Acid:
EDQDLKSLMIKTKRLIVDVI
Intron Amino Acid Position:
1384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
75.1
0.57
1.1
79
32
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
70.1
0.63
1.3
75.65
35.9

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031192
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000019323
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073