Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25443656_25445029_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25443656 - 25445029

Intron Length:

1374

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGAG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

GTTTCCTTTACA

Flanking Amino Acid:

NQLEMQTGEASKLPYDVTTE

Intron Amino Acid Position:

1105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

38.2

Major BPS

81.8

0.79

1.1

34.5

Major PPT

86.4

0.82

0.8

80.2

31.9

Minor 5ss

28.6

-2.5

3.5

36.8

47.7

Minor BPS

77.7

0.87

1.5

84.68

34.6

Associated Gene:

Gene:

IQGAP2

Ensembl Gene ID:

ENSAPLG00000002992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028358

25425763 - 25556835

131073

ENSAPLT00000019323

25425763 - 25556835

131073

ENSAPLT00000003170

25425763 - 25556835

131073

ENSAPLT00000034790

25425763 - 25556835

131073

ENSAPLT00000031192

25425763 - 25556835

131073