About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25448058_25448173_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25448058 - 25448173
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTGTACCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTTGCTTGATC
Flanking Amino Acid:
RKRLQYFKDHNEEIVKIQAF
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
80.2
0.68
0.9
73.3
37
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
70
0.61
1.7
81.45
33.4

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031192
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000019323
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073