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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25464569_25466418_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25464569 - 25466418
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTAATAACC
Flanking Amino Acid:
VNMQIQEENERIIAIGHINE
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.1
0.77
0.7
80.4
31.4
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
52.4
0.06
2
72.11
38.8

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073