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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25466544_25469491_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25466544 - 25469491
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
TATCTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATATCT
Flanking Amino Acid:
FNNLEEENLQRYADTLLSIK
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
72.6
36.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
0.7
77
31.4
Minor 5ss
36.2
-1.6
3.7
56.5
47.7
Minor BPS
54.7
0.23
1.8
77.51
38.9

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073