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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25470350_25472658_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25470350 - 25472658
Intron Length:
2309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TGCTGTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGAAAATTAATA
Flanking Amino Acid:
ANADAEAHKLKLIAVDNINT
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
0.9
78.6
29.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74
0.54
0.9
65.8
41
Minor 5ss
33.8
-1.8
2.9
44
38.6
Minor BPS
49
-0
1.8
60.67
38.5

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003170
25425763 - 25556835
131073