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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25474093_25474705_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25474093 - 25474705
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGGTA
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
ATTTCTTTGACT
Flanking Amino Acid:
RRKQSSARLKNGTISEEERD
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
65.9
39.8
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
31.5
-2.1
3.8
46.2
49
Minor BPS
83.8
1.15
0.9
93.38
27.4

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028358
25425763 - 25556835
131073
ENSAPLT00000019323
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000031192
25425763 - 25556835
131073