About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25478667_25479038_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25478667 - 25479038
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTGAACA
Flanking Amino Acid:
QDLLGKVDFTEEEISNMRKE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
77.4
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
1
73.4
40.7
Minor 5ss
35.3
-1.7
3
50
45.8
Minor BPS
65.8
0.49
1.4
76.56
34.1

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019323
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000031192
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073