Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25484204_25485917_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25484204 - 25485917

Intron Length:

1714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATCTAT

U12 Branch Point Sequence:

TCTCCTTCAACA

Flanking Amino Acid:

RAMESIGLPKIFYPETTDVY

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

0.4

1.3

64.8

42.4

Major PPT

100

1.12

0.4

100

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

64.8

0.46

1.5

73.01

38.9

Associated Gene:

Gene:

IQGAP2

Ensembl Gene ID:

ENSAPLG00000002992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019323

25425763 - 25556835

131073

ENSAPLT00000003170

25425763 - 25556835

131073

ENSAPLT00000034790

25425763 - 25556835

131073

ENSAPLT00000031192

25425763 - 25556835

131073

ENSAPLT00000028358

25425763 - 25556835

131073