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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_25487424_25533133_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25487424 - 25533133
Intron Length:
45710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATGTATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAAAT
Flanking Amino Acid:
EYLCHLEEAKRWMEVCLEEE
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74
0.54
1
66.3
44
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
65.5
0.56
1.6
82.37
38.4

Associated Gene:

Gene:
IQGAP2
Ensembl Gene ID:
ENSAPLG00000002992
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019323
25425763 - 25556835
131073
ENSAPLT00000003170
25425763 - 25556835
131073
ENSAPLT00000034790
25425763 - 25556835
131073
ENSAPLT00000031192
25425763 - 25556835
131073
ENSAPLT00000028358
25425763 - 25556835
131073